PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37843.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 262aa    MW: 29279.5 Da    PI: 4.7726
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37843.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.51.3e-5361441128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                   lppGfrFhPtdeelv++yLk+k++g ++el ++i+evd+yk+ePwdL  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v+++
  MLOC_37843.1   6 LPPGFRFHPTDEELVNYYLKRKIHGLHIEL-DIIPEVDLYKCEPWDLAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVMTQ 101
                   79****************************.99**************84335556888**************************************8 PP

           NAM  96 ..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             + +++g+kktLv+y+grap+g++tdWvmheyrl
  MLOC_37843.1 102 qhhggggsggGARAIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 144
                   66666655554455***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-624167IPR003441NAC domain
PROSITE profilePS5100559.2436167IPR003441NAC domain
PfamPF023658.7E-307144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKIHG LHIELDIIPE VDLYKCEPWD LAEKSFLPSR  60
DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVMT QQHHGGGGSG GGARAIGMKK  120
TLVYYRGRAP QGVRTDWVMH EYRLDDKDSE DTIAIQDTYA LCRVFKKNAI CAEVEELQEG  180
QCSMALLEGA CQQLLAAGSR TTAGQEYYQT PSPDVPAGST SGGADPDAED DDADKDDSWM  240
QFISEDAWCS STVAEESTSC VA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-51216811169Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00363DAPTransfer from AT3G17730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2514930.0AK251493.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf127o16, mRNA sequence.
GenBankAK3595070.0AK359507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1098E06.
GenBankAK3610300.0AK361030.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1130O02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653037.11e-152PREDICTED: NAC domain-containing protein 74-like
SwissprotA4VCM02e-83NAC45_ARATH; NAC domain-containing protein 45
TrEMBLF2D6J50.0F2D6J5_HORVD; Predicted protein
STRINGMLOC_37843.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37133879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-118NAC domain containing protein 57